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Would have to see what the initial parameters were that were given to cmake to be much help. You also have to be careful trying to reconfigure an existing cmake build environment "on the fly." Some things can't be changed in an existing build environment. Always best to delete the cmake build environment and reconfigure from scratch if there's any doubt.
Offhand, it sounds like your build environment got a little confused about whether it was a Release or Debug build.
I just did a full make && make install on a Sigil debug build to make sure something wasn't messed up, though. It all worked as it should.
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