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I look at "Highlights" as something different from "Notes" or "Annotation". KOReader handles "Highlights" (highlighted existing text in a book) in a few ways, including wirelessly sending them to your "Evernote" account. They are also included in the SDR files that are now what is "synced" between KOReader devices (KOReader runs on a number of devices including Kindle, Kobo, Pocketbook, and some Android)
As for user added text, "Notes" or "Annotations", not yet. You can add a comment to the "Book Status/Statistics" page, and I would expect that to be included in the SDR, but it is not something I have tried.
Luck;
Ken
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