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The series setting is actually part of the main KoboTouch driver rather than the extended driver. The extended driver is reusing the function.
Assuming that everything is configured correctly, it should just work. The configuration to check is the driver option and that metadata management is set to automatic. But, if it is working for other books, they must be set correctly.
The other trap with this is that the series info is set the next time you connect the device after sending the books. That means the book has to be processed into the devices library and that calibre shows the book on the device when you reconnect.
If all that is OK, then I need to see a debug log. Restart calibre in debug mode, connect the device and let the connection jobs run. Then close calibre and post the log that is displayed.
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