Well, epic fail for Kobo. None of my annotations sync from my iPad to the desktop app (OSX). Call to support was a waste of time ("sorry, we can't help you, and we have no idea why it isn't working). So it looks like I'll have to input all my annotations by hand.
I'm going to start using either iBooks or Marvin to export annotations from now on. No more Kobo app for me.
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