It'll rebuild the *Collection* db, not the *Content* db (granted, they're stored in the same actual DB, but LS won't touch the basic content stuff if it's not pertaining to collections stuff).
You'll have to do that over SSH. Or build a basic update package that does a rm -f /var/local/cc.db (which, somehow, feels strangely familiar, so, hey, you might try to do an attachment search on my nick).
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