@kayLee: I think you want to remove those extra "chapters" at the end that are actually the first chapters of the next book in the series or other books in the series. If so, probably not with out actually opening it in the editor. The problem is that what you want to remove won't be the same all the time. Mostly, you probably want the last two or three "chapters" removed. But sometimes it is the last four, and other times it is the fifth last to the second last (keep the last). It would not be hard to write a plugin to do that (prompt for how many chapters to removed from the end of the book, or the range of chapter, or display the ToC/file list to select the ones to remove and then remove them and fix the ToC and OPF), but, you would still need to look at each book and decide which chapters to remove. It's probably just as easy to delete them in the editor as do it this way.
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