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@bookman156: That happens because you have anchors *inside* the footnote that are pointed to by links in the main text. For example in footnote 9 you have <a id='page170'> Remove that and you will be fine.
The heuristic used to detect footnotes stops on anchors that are pointed to by other links in the text, on the theory that they could be the start of the next footnote. That said, I have changed the heuristic to only regard the anchor as a breaking point if it is not styled as an inline element.
@davidfor: I committed a fix for your issue, you should be fine now.
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