I personally use an android tablet with the Calibre Companion book organizer since I enjoy having all my books organized together regardless for format. Everything is organized just as it is on Calibre with similar search capabilities and the books can be easily opened by the appropriate book reader app.
The rest of my family uses kobo ereaders (touch and Glo HD), it takes a bit of setup using a kobo plugin but you can automatically organize your books into collections as they are sent to the kobo from calibre.
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