Sorry, no. The main reason is that the calibre viewer doesn't support annotations and bookmarks in the same way as the Kobo's do. The viewer's bookmark basically the same as the dog-ear bookmark that Kobo does. The viewer does have a name that could be used for the annotation, but as it isn't marking selected text, it isn't the same. More support for bookmarks is in Kovid's plans, so when that happens, I will look at it.
The other reason for it not being in the Kobo Utilities is the Annotations plugin. When the viewer has full support for annotations, I'll be adding the function there.
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