Despite what others have said, Calibre can remember multiple libraries. I've been running it this way for years.
You need to make a slight change to your folder structure. Specifically, get rid of your "My Libraries" folder. So you would have:
Y:\Calibre Portable
Y:\Calibre Portable\Calibre - Location of Calibre.
Y:\Calibre Portable\Calibre Library - Where Calibre put its library.
Y:\Calibre Portable\Calibre Settings - Created by Calibre.
Y:\Calibre Portable\My library 1.
.
.
.
Y:\Calibre Portable\My library 7.
If you do this, Calibre should remember them all.
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