Not quite sure what is going on in this case, but here is a tip to make the book-series manage thing easier
Manage Series Plugin

(this also uses the exact same name for all in the group. no stray characters)
Places to look while Troubleshooting ;
Tag Browser: Series. Do you see multiple entries?

You can rename an entry right there: Rightclick menu: Rename
or Manage Series . But unlike Manage Authors, you can not manipulate the series_sort data from this
Tweaks: did you ever change the
Code:
# Control sorting of titles and series in the library display
title_series_sorting = 'library_order'
? That will change how article sortin was handled
at entry time.
Ninjad by Kovid