Just search for "Calibre Lib". You might have chosen to place it anywhere, not just in the default spots. Mine is elsewhere. For that matter, my calibre.app in not in /Applications nor ~/Applications and that hasn't stopped it from running. I'm on OSX 10.10.5 so perhaps I can't directly compare but my calibre.app has been in a non-standard location for quite a few OSX versions.
Has downloading a new copy of the app itself been suggested yet? Just in case?
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