Thank you for the quick reply.
Good, I will fork the repo, code the part for handling MO under cases 1. and 2., and open a pull request.
(BTW, aeneas is released under the AGPLv3, and it works on Linux, Windows and OS X, albeit it currently requires Python 2.7.x. In any case, it will be used outside Sigil. My idea is to create a Sigil plugin that will create an "aeneas Job" from the current EPUB --- basically, a ZIP file with the appropriate resources to compute the SMIL files --- so that the user could run aeneas on it outside Sigil, and import back the computed SMIL files.)
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