I see what you're saying now. The text is truncated in the dialog that indicates what "Generate Table of Contents" is going to do. However, if you go ahead with the generation of the ToC, you'll see that no content is actually being truncated in the generated ToC.
The newlines created by pretty-print are, however, being included in the generated ncx (and are being displayed in the Table of contents widget). As I mentioned before, this is probably what needs to be addressed foremost.
Thanks for the report.
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