donB006: I suggest you read the original guide, if you haven't done so already, I know it's quite verbose but it contains valuable information, e.g. regarding your former problem with .dat files.
re syslog-ng.conf: Feel free to extract the file from your Kindle and bspatch it on your PC with a the binary patch from the OTA update. Then verify the MD5s (the original, the patched and the expected-new). See how the script does it, it's fairly simple shell string match. (I somehow guess that you still don't have the proper/expected/vanilla syslog-ng.conf file.)
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