Just been playing around with a few files and cant see where its going wrong.
Have compared the opf files and both seem to have the same fields in the same places, one always converts to AZW3 and the other MOBI. I tried the send to kindle program and the only difference is everything gets sent as AZW file regardless.
I removed my old K4 NT and Android app from my account so it only has my PW3 and that makes no difference either.
So a bit of a loss now as to why its doing things so differently.
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