I had a similar problem, but worse. After applying the most recent update, I also restarted my Mac. Then upon starting Calibre, it said the library was corrupted. I tried restoring, but it failed. I had to create a new library. I created a new library and imported all of the files from my original library without a problem, and it seems to have the tags and metadata I had assigned, so I suppose those were written to the files. The e-book files are located on a server on my network.
I'm also now having issues getting a connection to the content server from within Calibre Companion, where before I had no problem. I can connect thru the web to view my library, so I know the port (port forward) I specified is correct.
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