Thanks Ken.
I haven't enabled authentication on the OPDS server so that's not an issue.
Koreader being confined to its folder will make troubleshooting easier. The ability to have side-by-side instances is very nice indeed, and something I would never have thought of-- thanks for pointing that out.
I will try the nightly version with which you have had success and your other suggestions. I may also try a COPS install on my LAN if I can get the local calibre and "built in" sites working first. Should I find something that I think might be useful to someone else, I will report back here.
I have no issue opening a new issue on github but I'd like to gather a bit of info before doing so. I can't find anything useful in the Apache logs and I'd like to see the URLs koreader is requesting when getting the 404s. I think that would be helpful. Perhaps I can get some answers via wireshark or tracking traffic via my home router.
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