This catches me out too, especially because the close box (top right of the main window) now minimise calibre to the system tray, so it is still in fact running (I know you can switch off the use of the system tray). Perhaps an Exit menu option is needed, which really closes the app (maybe it is there and I have missed it). I also know you can close to the system tray and then right click on the system tray icon and choose quit to close the app. But this is not the same as being able to close directly from the main window.
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