These are highest level addresses. If you need specific examples of further paths, let me know.
The Gossamer Project: The X-files FanFiction Archive
(the following sites are mirrors - the first is the initial request with the others provided if needed or possible).
All are ACTIVE.
http://fluky.gossamer.org/
http://tooms.gossamer.org/
http://krycek.gossamer.org/
ftp://ftp.gossamer.org/stories/ (this one seems to be the main storage of the above and does not contain the navigation links within the other pages.
Ephemeral - The X-files Fanfic AutoArchive ACTIVE
http://ephemeralfic.org/
Am I requesting this correctly? It's my first attempt.