Uninstalling does not remove config settings, nor does it delete your ebooks. That is by design and is not going to change. Uninstalling undoes only and exactly what installing does. Namely, program files and start menu/desktop shortcuts.
And file association entries in the registry are created by individual users, not the installer. They are in the the user hive of the registry, not the system hive, so a system level uninstaller should not be removing them. Once again, uninstall removes only what install creates.
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