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Its USB ID will change.
No other visible changes.
DO NOT try to do things from a VM - it is very rare that a VM can keep up with the USB ID changes before the downloader mode times out.
Use the Kubrick Live CD (which is Linux) in command line mode if you need command line tool access.
(Alt-F4 is the escape from the Wizard, IIRC)
DO NOT try the above on a PC with USB-3 ports.
Only very few (chip) brands of USB-3 port hardware works, so just assume that none of them do.
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