@anacreon: Do you have Dropbox or Copy or some similar service where you could put the original ePub and the converted KePub up for me to download? These are obviously copyrighted works, so please don't post the links publicly, PM them to me, and I'll let you know when I download them. I'd like to take a look at the files and see if I can sort out what may be different enough to throw off the alignment.
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