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after a reboot of MAC, the error was gone. I will keep an eye on it.
For the collection , here are what I found.
1. follow the instruction of the topic to set up calibre
2.
a.kobo not install KSM , everything is fine.Send books kobo through Calibre, then eject the device, kobo will re-index and show books and collections correctly.
b. install KSM, something strange.After sending kobo through Calibre and eject device, sometime, kobo will not re-index, and although kobo show the new books at once but not time the collection was updated. I have to make a reboot or use exit_nickel then run nickel again, collection will be updated. And sometime, Calibre has problem to talk to Kobo.
Above tests are based on several times to reset to factory/ log out account on kobo for repairing the DB.
So I am pretty sure KSM cause the issue.
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