I believe I've found a bug in Modify ePub's kepub removal.
Code:
<?xml version='1.0' encoding='utf-8'?>
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en">
<head>
<title>Wild Cards I</title>
<link rel="stylesheet" type="text/css" href="../styles/stylesheet.css"/>
<style id="kobostylehacks" type="text/css">div#book-inner p, div#book-inner div { font-size: 1.0em; } a { color: black; } a:link, a:visited, a:hover, a:active { color: blue; } div#book-inner * { margin-top: 0 !important; margin-bottom: 0 !important;}
</style><meta http-equiv="Content-Type" content="text/html; charset=utf-8"/>
</head>
That's the header after Modify ePub has removed the kepub innards.
Code:
<?xml version='1.0' encoding='utf-8'?>
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en">
<head>
<title>Wild Cards I</title>
<link rel="stylesheet" type="text/css" href="../styles/stylesheet.css"/>
<style id="kobostylehacks" type="text/css">div#book-inner p, div#book-inner div { font-size: 1.0em; } a { color: black; } a:link, a:visited, a:hover, a:active { color: blue; } div#book-inner * { margin-top: 0 !important; margin-bottom: 0 !important;}
</style><meta http-equiv="Content-Type" content="text/html; charset=utf-8"/>
</head>
Now the bit in bold is what's left in and this does change how the formatting is in the eBook. If this was also removed, then things would work better.