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An update. I backed up my Calibre configuration directory and then deleted it. Uninstalled Calibre. Installed Calibre 2.2 and IOSRA and Marvin XD. I am now back to the database disk image is malformed error:
calibre, version 2.2.0
ERROR: Error: Error communicating with device
database disk image is malformed
Traceback (most recent call last):
File "site-packages/calibre/gui2/device.py", line 86, in run
File "site-packages/calibre/gui2/device.py", line 501, in _books
File "/var/folders/g4/jj3y1bvs4h53f4tpsc7_d3x40000gn/T/calibre_2.2.0_tmp_hVp_Ts/HN1ZuR_ios_local_db/Marvin_overlays.py", line 301, in books
DatabaseError: database disk image is malformed
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