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I did the delete (booklist.db) and tried Calibre 2.1 again.
I get a very similar error message (appended).
By the way my ipad is running iOS 7.1.2
calibre, version 2.1.0
ERROR: Error: Error communicating with device
database disk image is malformed
Traceback (most recent call last):
File "site-packages/calibre/gui2/device.py", line 86, in run
File "site-packages/calibre/gui2/device.py", line 501, in _books
File "/var/folders/g4/jj3y1bvs4h53f4tpsc7_d3x40000gn/T/calibre_2.1.0_tmp_xD2dcC/eZup5K_ios_local_db/Marvin_overlays.py", line 301, in books
DatabaseError: database disk image is malformed
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