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It is worth mentioning that if you have the Conflicted Copy type files it means that the syncing software (DropBox?) did not know which was the most up-to-date version of the file. This can result in lost updates (and thus books) from your library if Dropbox has chosen the wrong one to use.
A typical cause of such an issue is running calibre on two different machines simultaneously. Calibre is a single user system and does not support such operation. It can also happen if Calibre was run at different times on two different machines and the DropBox sync process was not allowed to complete after exiting Calibre.
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