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Along similar lines, I am having a similar issue....i have an old pc laptop that doesn't work very well...have a calibre library on the pc which i transferred to ibooks via usb and iTunes. I had several books that i made notes and highlights on through ibooks. when i try to put the same .epub file into ibooks on my new mac (through connect to server on calibre), the highlights and notes don't carry over.
If I use this thumb drive method, would the notes and highlights be retained? Also, is there another way to transfer without a thumb drive? can i use dropbox or something?
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