By the way, there is an important and often overseen point in
How do I convert a collection of HTML files in a specific order?for those who works often with html files:
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By default, when adding HTML files, calibre follows links in the files in depth first order. This means that if file A.html links to B.html and C.html and D.html, but B.html also links to D.html, then the files will be in the order A.html, B.html, D.html, C.html. If instead you want the order to be A.html, B.html, C.html, D.html then you must tell calibre to add your files in breadth first order. Do this by going to Preferences->Plugins and customizing the HTML to ZIP plugin.
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