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Old 04-07-2014, 07:04 PM   #6
eschwartz
Ex-Helpdesk Junkie
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Posts: 19,421
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Join Date: Nov 2012
Location: The Beaten Path, USA, Roundworld, This Side of Infinity
Device: Kindle Touch fw5.3.7 (Wifi only)
It will go into the folder for the book record in the library. There is no way to get around that, as calibre does not and will never allow you to choose your own library organization.

You can use the command-line utility "ebook-convert" and specify the input/output files, however.

See here for the documentation: http://manual.calibre-ebook.com/cli/ebook-convert.html
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