As long as you have downloaded material in epub format from Kobo there should be no issue. You will have the standard Adobe DRM to contend with but Apprentice Alf integrates nicely with calibre.
On the other hand if you have the books in kEpub format, then Alf does include a script (Obok I think) that will remove the Kobo DRM and let you access a version that should work as epub but just contains many <span> sections that are used by the Kobo ACCESS engine as a part of their bookmark support.
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