Looking at those screenshots, I dont see what is to be flabbergasted about? It looks like normal hyphenation for long words at the end of a line. Of course since I cannot read DUtch?, I dont know if the hyphenation is correct or not. Probably the files you are viewing have soft hyphens embedded causing the hyphenation.
In any case if you want to determine if calibre is causing hyphenation, simply copy one of those books to the reader without using calibre and see what happens.
When copying books to the reader all calibre does is update their metadata. The only way that can cause hyphenation is if it sets the language metadata and the reader then reads that and turns on hyphenation. Which you can prevent by clearing the language field in calibre.
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