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Some of information is stored in mySQL files in .onyx folders. (Each folder is created at location of document file), some of information is stored in mySQL file somewhere on systém partition.
I am not sure which case Annotation Titles is.
If it is 1st case, it may be easily backuped and it have not been lost by installing a new firmware.
If it is 2nd case, than it is hard to backup and it might been lost during installin a new firmware, if something went wrong.
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