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@cybmole - does FFS use, set or or reset any attributes. Goodsynch can take their values into account in its comparisons? I ask because the OP appears to be using both.
@robin28
Are you using the latest versions of Goodsynch (GS) and FFS, and are you using the 'free' or 'paid' version of GS. I use 'paid' because it has features I want (not for calibre libraries) that aren't available from 'free'.
I wonder if those results from UltraCompare can be 'trusted', to me they don't make any sense.
Yesterday I noticed that GS has the ability to override the text content compare engine, the default is the UNIX 'diff' engine. If you have you 'plugged' UltraCompare into GS (and/or FFS) as the text compare engine, then I suggest you take it out - 'diff' may not be the fastest compare utility on the planet, but not many would doubt its efficacy.
Assuming file is present on both sides, I have GS configured to compare file mod date, size and MD5 checksum to decide if file has changed, I don't compare content.
BR
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