Does it sort by folders now? Having single pages as images sounds like a pain in the .. But being able to drop files in to folders and have them sort like that sounds like its doable.
Especially if the comics are converted to pdf by je-comics.
Openness is a major factor to me as well, but calibre is a really nice solution as well. Maybe they will come up with epub soon and then we'd get best of both worlds.
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