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Two of the plugins come standard with calibre; KoboTouch (2.1.6) and Kobo Reader Device Interface (2.1.6). The KoboTouch driver is the native support for newer model Kobo's. Touch / Mini / Glo / Aura HD / Aura, while the Kobo Reader Device Interface supported the older Kobo and Kobo WiFi devices.
The KoboTouchExtended plugin is an add-on that provides support for converting books on the fly from standard ePub to Kobo ePub format
Only one of the KoboTocuhExtended and KoboTouch drivers should be enabled within calibre.
Be sure to configure the options in the driver you ARE using. The simplest way to do that is with the device attached to your PC and calibre having recognized the device select the little arrow besides the Device button on the top of the calibre screen, and pick the "Configure this device" option.
As long as Metadata Management is set to Automatic in Preferences | Sending Books to devices, then any changes in collections in calibre will be reflected on the device the next time it is connected.
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