Onemack: If what PeterT thinks is happening, you are already using the extend driver. This is usually used to send books as kepubs instead of epubs to the device. If that isn't what you want, then then open the preferences, go to the plugin section and find the KoboTouchExtended driver. Select it and uninstall it.
If you do want to use kepubs, then you need to change the configuration of the extended driver. You can do that from the plugin list above. Or, when the device is connected, right-click on the device icon in calibre and select "Configure this device". Then select the "Use full book page numbers" option and press the OK button to save the change. The extended driver makes sure the config file has the appropriate setting based on whether this option is selected or not.
If you are not using the extended driver, then something else is going on.
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