Yes, there are certainly dozens of possible solutions, but the way I'd want it to FUNCTION, is that I could add a certain colour highlighting to a section of text, and then add annotes at that text position. This way, I can re-visit the book, and when coming upon that highlight, I could easily call up the linked annotation. This set-up would lend itself easily to further study as well, as you could step through highlights/annotes quickly and easily...
Anyhow, there's little use defending the pros of annotations, since most eReaders have already seen the light and incorporated them. It would just be nice (for me anyways) if Calibre did too.
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