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Book matching on the device is a many layered thing. First for books that calibre sends, it records the book uuid in metadata.calibre. If that does not exists, then metadata based matching is performed. You can run calibre ind ebug mode in which case the in library column shows how the matching was performed. You can also manually tell calibre a book on the device matches a book in the library by right clicking ont he bookint he device view.
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