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Ah, I see! For some reason I didn't notice that in addition to the main toolbar, there is a toolbar in the editor component. I assume that one just saves to the exploded ebook, and the main save button saves the current explosion back to the original source?
I guess I'm just too used to the Sigil layout, I was thinking about it the way I would think about saving in Sigil. However Sigil manages it, it keeps track of all that stuff on the fly and you just have to worry about saving back to the source epub when done.
On another note, I've noticed, now I've been trying things out, that when calibre generates/edits a ToC, it insists on using UUID's for the link, even with header elements that are traditionally the very first element. Sigil will just link to the page itself... now that I come to check it, for the first link on any file. Huh.
Would it be possible, somehow, to select the actual file, instead of an element within the file, to link to? And also, when autogenerating a ToC from major headings, to check if the link is to the first element, and just head straight to the top? It's essentially unnecessary code, and I think it would be nice if calibre could detect that and avoid creating it.
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