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I don't know eink-auto-update, but it's certainly not needed. It should be just about the proper setup of the framebuffer, and probably it's just not in a state that koreader can handle. If I were in your place, I'd just wait a few days, then koreader will (hopefully) get a new framebuffer interface that can handle more situations. But for a start, could you please just use fbset to dump the current settings into a file to examine what exact state the framebuffer is in at that point?
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