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If it is for yourself or a small group, make a PDF out of it.
You can't preserve the layout, just as HarryT says. This is an issue even between 10" screens and 5" screens.
You can put in an endless supply of links to different locations which replicate the references, but what a pain. It also brings up where do you put foot/end notes?
Within each chapter tends to work better, since the machine can stay in the same file. But many works refer to notes at the end of a book.
Since the bottom of the page can not be predicted, you can insert footnotes immediately following the paragraph in which they are referenced, if they aren't too long.
How to overcome these and other similar obstacles has been the fodder for extended discussions in these forums.
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