So, did the black processing screen get displayed when you disconnected from the PC?
If you can see the books on the device when connected, then they should be seen by the device. Where are you putting them?
There have been issues with books with errors in them. When the device disconnects, it processes all new books it finds and adds them to the internal database. If the device finds a bad book, then it stop processing all of them. If this happened to be the first book it found, then you won't get any added. If this is what is happening, then you need to remove all the books and add them back in small batches until you find the bad book. But, what I would do first is to add a book that is known to be good. Get an epub from the library here at MR and add it after you remove the other books.
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