If the "eps" is available, I assume these are some sort of vector art you created? Your best bet would be most likely a PNG export with no transparency (an Indexed image with <256 colors if that is suitable for the image).
What is the purpose of the ebook?
Is there going to be text?
Is it just going to be 39 images plopped in the EPUB? Is this a comic or something?
Have any samples you could post?
Really need more information on what exactly you are trying to do, before anyone can help you.
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