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Frank Herbert's _The White Plague_.
Steven Boyett's _Ariel_ and _Elegy Beach_ (I think they have everything but zombies and vampires though).
The Borderlands, Bordertown and other books which it inspired.
Stephen Vincent Benét's 1937 story ``By the Waters of Babylon''
Dean Ing's Single Combat and two other books make for a mildly amusing trilogy if one's interests run that direction.
Harlan Ellison's short story ``I Have No Mouth, and I Must Scream''
H. Beam Piper's ``Genesis'' looks at this from a very different angle.
Ursule Le Guin's _Always Coming Home_ takes place a long while after an apocalypse
Vernor Vinge's ``Longshot'' (available in _True Names and Other Dangers_) looks at how humanity might face an apocalypse
Ben Bova's _Exiles Trilogy_ as well.
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