Hey thanks for the reply.
That wasn't it, I had been able to move the the rtf to another folder outside of the Calibre structure, and work on it there. It might have been opened for some of the time when I was trying to delete the Calibre folders, but definitely not the entire time... and I wouldn't think I'd have been able to move it (or edit it) if Calibre was holding on to it... or that Calibre weas even aware of it once it had been moved.
It cleared up as soon as I deleted the debug folder that I had specified. I didn't look closely at what was in that folder, but I saw it had several hundred files, each named with references to a pages and/or other object in the file .epub file I was converting.
Thanks again!
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