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Hi Kris
This is probably something you know, but just in case. If I load book on iPad via Calibre Connector, and the same book on iPhone via OPDS catalog, it thinks they are different books. Probably slight difference in meta-data with the two ways of transferring. It's not a problem, I just made sure both were transferred via the Connector as it is much better at bringing in tags and other useful stuff.
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