Thank you for taking your time to answer. Yes, my file contains both the new and old format, but I don't think it's my file's fault. I've downloaded many epubs from popular authors and converted them to .mobi using Kindlegen; the result was always the same, they all had the problem I've described before.
I guess I shouldn't pay any attention to it as it's probably the webkit or Kindlegen's fault. Like you said William, people are not going to be skipping around randomly, so I guess I shouldn't worry much. It's just that I want every single detail to be perfect, and I hate it when I don't have control over something. I'll just have to let it go.
Thanks again!
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