I've had some more time to test Komic (still Kindle PW 5.3.5). Two points:
The updated readingJS is helping a lot, but micro-scrolling does still occur. Perhaps the min pixel range moved needs to be larger for the PW as it has a higher-res screen for the same screen area? I haven't had time to test tweaks to the JS yet.
A combo bug: I have "go to last read" enabled as well as autosave and autojump, and I can read through comics great. But when I get to the end and it tells me "no more comics", clicking OK takes me to Home, which then immediately takes me to the first page of the last comic I viewed. I can only get Home by going through the Reading menu.
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